If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ), 'gf_id' => 'HOM05D000969', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000969' ), 'data_identifier' => 'HOM05D000969', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11880' => 'bna', 'A03p45260' => 'bna', 'A03p54900' => 'bna', 'A04p00640' => 'bna', 'A04p13650' => 'bna', 'A04p26670' => 'bna', 'A05p07500' => 'bna', 'A06p21850' => 'bna', 'A07p02780' => 'bna', 'A07p02800' => 'bna', 'A07p21220' => 'bna', 'A08p10890' => 'bna', 'A08p16620' => 'bna', 'A09p10480' => 'bna', 'A09p35260' => 'bna', 'A09p45930' => 'bna', 'Aa31LG10G7890' => 'aar', 'Aa31LG5G11470' => 'aar', 'Aa31LG6G12320' => 'aar', 'Aa31LG6G2530' => 'aar', 'Aa31LG9G16270' => 'aar', 'Aa31sc449G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.920' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.726' => 'aag', 'Actinidia00376' => 'ach', 'Actinidia00377' => 'ach', 'Actinidia11506' => 'ach', 'Actinidia29030' => 'ach', 'Actinidia34771' => 'ach', 'Actinidia38915' => 'ach', 'Ah.09g231930' => 'amhyb', 'Ah.12g064880' => 'amhyb', 'Ah.15g089970' => 'amhyb', 'AL1G45190' => 'aly', 'AL3G46460' => 'aly', 'AL3G46470' => 'aly', 'AL4G25140' => 'aly', 'AL4G30960' => 'aly', 'AL5G33620' => 'aly', 'AL7G33710' => 'aly', 'Aqoxy1G01265' => 'aox', 'Aqoxy1G01371' => 'aox', 'Aqoxy6G02683' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AAN5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76V370' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9WS90R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HEV3CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4TMP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ6RG5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKNT2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VXAI8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJW0E1' => 'arhy', 'AT1G30900' => 'ath', 'AT2G14720' => 'ath', 'AT2G14740' => 'ath', 'AT2G30290' => 'ath', 'AT2G34940' => 'ath', 'AT3G52850' => 'ath', 'AT4G20110' => 'ath', 'ATR0208G013' => 'atr', 'ATR0763G263' => 'atr', 'ATR1127G102' => 'atr', 'Atru.chr10.263' => 'acertr', 'Atru.chr11.1736' => 'acertr', 'Atru.chr5.2365' => 'acertr', 'Atru.chr8.109' => 'acertr', 'AUR62006422' => 'cqu', 'AUR62029771' => 'cqu', 'AUR62034091' => 'cqu', 'AUR62038709' => 'cqu', 'AUR62039889' => 'cqu', 'AUR62040330' => 'cqu', 'BcaB01g00337' => 'bca', 'BcaB02g07808' => 'bca', 'BcaB02g09183' => 'bca', 'BcaB02g11535' => 'bca', 'BcaB04g18042' => 'bca', 'BcaB04g18198' => 'bca', 'BcaB05g21902' => 'bca', 'BcaB06g28818' => 'bca', 'BcaB07g32755' => 'bca', 'BcaB08g34568' => 'bca', 'BcaC01g03091' => 'bca', 'BcaC01g05775' => 'bca', 'BcaC02g07746' => 'bca', 'BcaC02g11118' => 'bca', 'BcaC02g12008' => 'bca', 'BcaC03g13101' => 'bca', 'BcaC04g23070' => 'bca', 'BcaC05g27128' => 'bca', 'BcaC05g27203' => 'bca', 'BcaC07g39420' => 'bca', 'BcaC07g39422' => 'bca', 'BcaC07g39650' => 'bca', 'BcaC08g44600' => 'bca', 'BcaNung03308' => 'bca', 'BcaNung06630' => 'bca', 'BNapus_Darmor_BZH_scaffold_209p00040' => 'bna', 'BolC1t01375H' => 'bol', 'BolC2t05992H' => 'bol', 'BolC3t14634H' => 'bol', 'BolC3t17898H' => 'bol', 'BolC4t22487H' => 'bol', 'BolC4t27886H' => 'bol', 'BolC5t31750H' => 'bol', 'BolC5t31834H' => 'bol', 'BolC6t37255H' => 'bol', 'BolC8t48185H' => 'bol', 'BolC8t50424H' => 'bol', 'BolC9t54138H' => 'bol', 'BolC9t60207H' => 'bol', 'BraA01t01130Z' => 'bra', 'BraA02t04671Z' => 'bra', 'BraA03t13659Z' => 'bra', 'BraA04t18172Z' => 'bra', 'BraA05t19715Z' => 'bra', 'BraA07t28078Z' => 'bra', 'BraA07t29809Z' => 'bra', 'BraA08t33085Z' => 'bra', 'BraA08t33086Z' => 'bra', 'BraA09t36693Z' => 'bra', 'BraA09t39053Z' => 'bra', 'BraA09t40053Z' => 'bra', 'BraA10t45409Z' => 'bra', 'C01p14080' => 'bna', 'C03p56110' => 'bna', 'C04p08980' => 'bna', 'C04p64090' => 'bna', 'C05p30130' => 'bna', 'C05p31100' => 'bna', 'C06p20720' => 'bna', 'C06p28920' => 'bna', 'C08p28120' => 'bna', 'C09p12450' => 'bna', 'C09p74750' => 'bna', 'CAN.G120.1' => 'can', 'CAN.G487.3' => 'can', 'CAN.G606.54' => 'can', 'CAN.G809.35' => 'can', 'CANSAT25G0296' => 'cansat', 'CANSAT25G3836' => 'cansat', 'CANSAT35G1241' => 'cansat', 'CARHR030390' => 'chi', 'CARHR123610' => 'chi', 'CARHR129110' => 'chi', 'CARHR162720' => 'chi', 'CARHR226950' => 'chi', 'CARHR286430' => 'chi', 'CARHR286440' => 'chi', 'CARHR289400' => 'chi', 'Carub.0001s2924' => 'cru', 'Carub.0003s2876' => 'cru', 'Carub.0003s2877' => 'cru', 'Carub.0004s1144' => 'cru', 'Carub.0004s1664' => 'cru', 'Carub.0005s1932' => 'cru', 'Carub.0007s2101' => 'cru', 'Ca_01974_v3' => 'car', 'Ca_02263_v3' => 'car', 'Ca_11035_v3' => 'car', 'Ca_23115_v3' => 'car', 'Ca_24356_v3' => 'car', 'CBR_g48825' => 'cbr', 'Cc00_g02180' => 'ccan', 'Cc02_g19790' => 'ccan', 'Cc06_g00380' => 'ccan', 'Cc09_g04880' => 'ccan', 'CDE01G0143' => 'cde', 'CDE02G1322' => 'cde', 'CDE02G2141' => 'cde', 'CDE02G3818' => 'cde', 'CDE06G1710' => 'cde', 'CDE07G1597' => 'cde', 'Cfa004633' => 'cfa', 'Cfa017024' => 'cfa', 'Cfa017025' => 'cfa', 'Cfa017026' => 'cfa', 'Ciclev10011298m.g' => 'ccl', 'Ciclev10014573m.g' => 'ccl', 'Ciclev10028015m.g' => 'ccl', 'CiPaw.05G017100' => 'cil', 'CiPaw.06G165700' => 'cil', 'CiPaw.09G139100' => 'cil', 'CiPaw.09G221800' => 'cil', 'CiPaw.10G107000' => 'cil', 'CiPaw.10G165100' => 'cil', 'ClCG01G025850' => 'cla', 'ClCG02G006790' => 'cla', 'ClCG02G006800' => 'cla', 'ClCG10G010470' => 'cla', 'ClCG10G022780' => 'cla', 'COL.COLO4_08300' => 'col', 'COL.COLO4_09225' => 'col', 'COL.COLO4_09226' => 'col', 'COL.COLO4_09277' => 'col', 'COL.COLO4_09279' => 'col', 'COL.COLO4_25041' => 'col', 'COL.COLO4_25044' => 'col', 'COL.COLO4_28903' => 'col', 'COL.COLO4_32524' => 'col', 'Cpa.g.sc106.56' => 'cpa', 'Cpa.g.sc20.8' => 'cpa', 'Cpa.g.sc30.91' => 'cpa', 'Cpa.g.sc86.60' => 'cpa', 'Cre02.g095111' => 'cre', 'CsaV3_3G033020' => 'csa', 'CsaV3_4G000370' => 'csa', 'CsaV3_6G053070' => 'csa', 'CsaV3_7G007850' => 'csa', 'CSS0010932' => 'camsi', 'CSS0015859' => 'camsi', 'CSS0025506' => 'camsi', 'CSS0029305' => 'camsi', 'CSS0033769' => 'camsi', 'CSS0035109' => 'camsi', 'CSS0043294' => 'camsi', 'CSS0046350' => 'camsi', 'DCAR_001688' => 'dca', 'DCAR_003747' => 'dca', 'DCAR_003748' => 'dca', 'DCAR_003750' => 'dca', 'DCAR_004348' => 'dca', 'DCAR_015336' => 'dca', 'DCAR_021954' => 'dca', 'DCAR_023973' => 'dca', 'DCAR_026435' => 'dca', 'DCAR_028733' => 'dca', 'DCAR_028923' => 'dca', 'Dinv05866' => 'din', 'Dinv15802' => 'din', 'Dinv23048' => 'din', 'Dinv25348' => 'din', 'Dinv35402' => 'din', 'Dinv35404' => 'din', 'Dinv42234' => 'din', 'Duzib052G0134' => 'dzi', 'Duzib132G0462' => 'dzi', 'Duzib132G1259' => 'dzi', 'Duzib151G0905' => 'dzi', 'Duzib212G0613' => 'dzi', 'Duzib248G0305' => 'dzi', 'Duzib248G1475' => 'dzi', 'Duzib268G0365' => 'dzi', 'ECA236G0307' => 'eca', 'ECA238G0810' => 'eca', 'ECA240G0428' => 'eca', 'ECA247G3136' => 'eca', 'ECA248G1344' => 'eca', 'EL10Ac7g17107' => 'bvu', 'EL10Ac7g17246' => 'bvu', 'EL10Ac8g19376' => 'bvu', 'Eucgr.A00725' => 'egr', 'Eucgr.E04321' => 'egr', 'Eucgr.G01233' => 'egr', 'Eucgr.K01287' => 'egr', 'FAN02G1163' => 'fan', 'FAN05G5460' => 'fan', 'FAN09G2784' => 'fan', 'FAN11G1321' => 'fan', 'FAN14G2555' => 'fan', 'FAN15G1238' => 'fan', 'FAN16G3130' => 'fan', 'FAN20G2094' => 'fan', 'FAN21G0864' => 'fan', 'FAN24G3009' => 'fan', 'FAN25G2293' => 'fan', 'FAN27G0555' => 'fan', 'FvH4_2g04230' => 'fve', 'FvH4_3g13190' => 'fve', 'FvH4_6g09810' => 'fve', 'Glyma.01G242800' => 'gma', 'Glyma.03G002800' => 'gma', 'Glyma.07G108300' => 'gma', 'Glyma.09G049700' => 'gma', 'Glyma.09G274300' => 'gma', 'Glyma.10G257300' => 'gma', 'Glyma.11G001500' => 'gma', 'Glyma.15G156400' => 'gma', 'Glyma.18G213400' => 'gma', 'Glyma.20G133800' => 'gma', 'Gohir.A01G008900' => 'ghi', 'Gohir.A03G087900' => 'ghi', 'Gohir.A03G182900' => 'ghi', 'Gohir.A09G213662' => 'ghi', 'Gohir.A10G151201' => 'ghi', 'Gohir.A12G050200' => 'ghi', 'Gohir.A13G046400' => 'ghi', 'Gohir.D01G008600' => 'ghi', 'Gohir.D01G090500' => 'ghi', 'Gohir.D01G090901' => 'ghi', 'Gohir.D01G090951' => 'ghi', 'Gohir.D02G107900' => 'ghi', 'Gohir.D02G204500' => 'ghi', 'Gohir.D09G215050' => 'ghi', 'Gohir.D10G115100' => 'ghi', 'Gohir.D12G048500' => 'ghi', 'Gohir.D13G045500' => 'ghi', 'Gorai.002G010300' => 'gra', 'Gorai.002G116100' => 'gra', 'Gorai.002G116200' => 'gra', 'Gorai.005G122400' => 'gra', 'Gorai.005G231800' => 'gra', 'Gorai.006G235500' => 'gra', 'Gorai.008G051500' => 'gra', 'Gorai.011G126800' => 'gra', 'Gorai.013G050300' => 'gra', 'GSVIVG01012164001' => 'vvi', 'GSVIVG01025808001' => 'vvi', 'GSVIVG01029316001' => 'vvi', 'GSVIVG01030177001' => 'vvi', 'GSVIVG01037845001' => 'vvi', 'HanXRQChr03g0069901' => 'han', 'HanXRQChr06g0181051' => 'han', 'HanXRQChr09g0244221' => 'han', 'HanXRQChr10g0287431' => 'han', 'HanXRQChr14g0439751' => 'han', 'HanXRQChr16g0510461' => 'han', 'Haze_05232' => 'cav', 'Haze_05236' => 'cav', 'Haze_10222' => 'cav', 'Haze_21180' => 'cav', 'Hma1.2p1_0174F.1_g076800' => 'hma', 'Hma1.2p1_1059F.1_g252930' => 'hma', 'Hma1.2p1_1773F.1_g301750' => 'hma', 'HPP92_000773' => 'vpl', 'HPP92_007761' => 'vpl', 'HPP92_016698' => 'vpl', 'HPP92_022860' => 'vpl', 'HPP92_026798' => 'vpl', 'HPP92_028079' => 'vpl', 'Hund12592' => 'sun', 'Hund19760' => 'sun', 'Hund28925' => 'sun', 'Hund28928' => 'sun', 'Lalb_Chr02g0145001' => 'lal', 'Lalb_Chr03g0043891' => 'lal', 'Lalb_Chr06g0165151' => 'lal', 'Lalb_Chr07g0195711' => 'lal', 'Lalb_Chr09g0319601' => 'lal', 'Lalb_Chr18g0052001' => 'lal', 'Lalb_Chr19g0123951' => 'lal', 'Lalb_Chr21g0308081' => 'lal', 'Lj1g0007140' => 'lja', 'Lj1g0010281' => 'lja', 'Lj2A342T112' => 'lonja', 'Lj2C58T11' => 'lonja', 'Lj3A941T98' => 'lonja', 'Lj3g0010330' => 'lja', 'Lj5A218G90' => 'lonja', 'Lj5g0015197' => 'lja', 'Lj6g0009448' => 'lja', 'Lsat_1_v5_gn_2_59580' => 'lsa', 'Lsat_1_v5_gn_5_151981' => 'lsa', 'Lsat_1_v5_gn_5_152981' => 'lsa', 'Lsat_1_v5_gn_7_85200' => 'lsa', 'Lsat_1_v5_gn_8_110480' => 'lsa', 'Lsat_1_v5_gn_9_111780' => 'lsa', 'Lsat_1_v5_gn_9_38760' => 'lsa', 'Manes.07G062100' => 'mes', 'Manes.08G170800' => 'mes', 'Manes.09G118400' => 'mes', 'Manes.10G083300' => 'mes', 'Manes.16G058100' => 'mes', 'Mapoly0009s0040' => 'mpo', 'Mapoly0038s0064' => 'mpo', 'MBI14_g30586_MAGBIO' => 'mbi', 'MBI15_g01606_MAGBIO' => 'mbi', 'MBI15_g36473_MAGBIO' => 'mbi', 'MBI16_g35585_MAGBIO' => 'mbi', 'MBI17_g21605_MAGBIO' => 'mbi', 'MBI18_g32819_MAGBIO' => 'mbi', 'MBI19_g21596_MAGBIO' => 'mbi', 'MCO07G498' => 'mco', 'MCO09G727' => 'mco', 'MD04G1175100' => 'mdo', 'MD05G1099000' => 'mdo', 'MD05G1244500' => 'mdo', 'MD10G1105000' => 'mdo', 'MD10G1226100' => 'mdo', 'MD12G1188800' => 'mdo', 'Medtr1g106940' => 'mtr', 'Medtr2g437910' => 'mtr', 'Medtr3g101430' => 'mtr', 'Medtr5g005100' => 'mtr', 'Medtr7g073350' => 'mtr', 'Medtr8g005800' => 'mtr', 'MELO3C007003.2' => 'cme', 'MELO3C009099.2' => 'cme', 'MELO3C017997.2' => 'cme', 'MELO3C018517.2' => 'cme', 'Migut.B00444' => 'egut', 'Migut.B01298' => 'egut', 'Migut.G00429' => 'egut', 'Migut.I00220' => 'egut', 'Migut.I00381' => 'egut', 'Migut.J00033' => 'egut', 'Migut.M02024' => 'egut', 'Migut.O00465' => 'egut', 'MSTRG.18939' => 'ama', 'MSTRG.20217' => 'ama', 'MSTRG.27761' => 'ama', 'MSTRG.5317' => 'ama', 'MSTRG.5495' => 'ama', 'MSTRG.7608' => 'ama', 'Nitab4.5_0000048g0060' => 'nta', 'Nitab4.5_0000632g0150' => 'nta', 'Nitab4.5_0000844g0380' => 'nta', 'Nitab4.5_0001105g0060' => 'nta', 'Nitab4.5_0001215g0200' => 'nta', 'Nitab4.5_0005145g0020' => 'nta', 'Nitab4.5_0008075g0080' => 'nta', 'Nitab4.5_0015896g0010' => 'nta', 'Nn1g02725' => 'nnu', 'Nn1g04587' => 'nnu', 'Nn2g10291' => 'nnu', 'Nn5g26843' => 'nnu', 'Nn5g30559' => 'nnu', 'Nn7g38384' => 'nnu', 'Oeu008733.1' => 'oeu', 'Oeu009672.1' => 'oeu', 'Oeu009673.1' => 'oeu', 'Oeu010438.1' => 'oeu', 'Oeu010441.2' => 'oeu', 'Oeu026946.1' => 'oeu', 'Oeu063849.1' => 'oeu', 'Oeu064869.1' => 'oeu', 'Os03g0335300' => 'osa', 'Os04g0611400' => 'osa', 'Os06g0664300' => 'osa', 'Os07g0680000' => 'osa', 'Os10g0346600' => 'osa', 'Os11g0116550' => 'osa', 'Os12g0116000' => 'osa', 'Peaxi162Scf00016g02846' => 'pax', 'Peaxi162Scf00036g00178' => 'pax', 'Peaxi162Scf00732g00251' => 'pax', 'Peaxi162Scf01238g00114' => 'pax', 'PGR004G0599' => 'pgr', 'PGR031G3158' => 'pgr', 'PGR042G2494' => 'pgr', 'PGR042G3630' => 'pgr', 'PGSC0003DMG400007334' => 'stu', 'PGSC0003DMG400025749' => 'stu', 'PGSC0003DMG400030017' => 'stu', 'PGSC0003DMG400031224' => 'stu', 'Phvul.002G052000' => 'pvu', 'Phvul.007G045100' => 'pvu', 'Phvul.008G082200' => 'pvu', 'Phvul.009G243800' => 'pvu', 'Phvul.010G057200' => 'pvu', 'Potri.001G075600' => 'ptr', 'Potri.001G294400' => 'ptr', 'Potri.003G155200' => 'ptr', 'Potri.003G155300' => 'ptr', 'Potri.006G108800' => 'ptr', 'Potri.009G088900' => 'ptr', 'Potri.016G137300' => 'ptr', 'Potri.016G137350' => 'ptr', 'Pp3c11_2830' => 'ppa', 'Pp3c11_3050' => 'ppa', 'Pp3c11_3940' => 'ppa', 'Pp3c12_15640' => 'ppa', 'Pp3c1_1390' => 'ppa', 'Pp3c2_34820' => 'ppa', 'Pp3c4_11280' => 'ppa', 'Pp3c7_20950' => 'ppa', 'Pp3c7_21030' => 'ppa', 'PRCOL_00002832' => 'pco', 'PRCOL_00004099' => 'pco', 'Prupe.4G119200' => 'ppe', 'Prupe.6G294400' => 'ppe', 'Prupe.8G143700' => 'ppe', 'Psat1g150800' => 'psa', 'Psat3g119440' => 'psa', 'Psat4g209320' => 'psa', 'Psat4g227720' => 'psa', 'Psat6g215000' => 'psa', 'PSO017G1238' => 'pso', 'PSO017G5147' => 'pso', 'PSO170G2404' => 'pso', 'PSO170G5395' => 'pso', 'PSO210G0338' => 'pso', 'PSO210G0652' => 'pso', 'PSO339G5317' => 'pso', 'PSO384G4331' => 'pso', 'PSO541G0884' => 'pso', 'PSO675G7423' => 'pso', 'QL07p032007' => 'qlo', 'QL07p032039' => 'qlo', 'QL11p011827' => 'qlo', 'QL11p030734' => 'qlo', 'RcHm_v2.0_Chr3g0460421' => 'rch', 'RcHm_v2.0_Chr5g0021401' => 'rch', 'RcHm_v2.0_Chr5g0021491' => 'rch', 'RcHm_v2.0_Chr5g0021501' => 'rch', 'RcHm_v2.0_Chr6g0252231' => 'rch', 'RcHm_v2.0_Chr6g0253651' => 'rch', 'Rhsim02G0169600' => 'rsi', 'Rhsim04G0121500' => 'rsi', 'Rhsim05G0231000' => 'rsi', 'Rhsim11G0153500' => 'rsi', 'RhsimUnG0124700' => 'rsi', 'Sabra01G0053400' => 'sbr', 'Sabra03G0112400' => 'sbr', 'Sabra03G0112500' => 'sbr', 'Sabra04G0153900' => 'sbr', 'Sabra06G0084800' => 'sbr', 'Sabra09G0068800' => 'sbr', 'Sabra16G0184200' => 'sbr', 'SalBow3G3120' => 'sbo', 'SalBow5G0550' => 'sbo', 'SalBow5G4374' => 'sbo', 'SalBow6G2210' => 'sbo', 'SalBow6G4316' => 'sbo', 'SalBow6G5914' => 'sbo', 'SalBow8G5501' => 'sbo', 'Sc14g0002900' => 'sci', 'Sc18g0003440' => 'sci', 'Sc20g0007010' => 'sci', 'Sc24g0002880' => 'sci', 'Sed0000350' => 'sed', 'Sed0002296' => 'sed', 'Sed0003525' => 'sed', 'Sed0006016' => 'sed', 'Sed0006400' => 'sed', 'Sed0009980' => 'sed', 'Sed0011724' => 'sed', 'SEGI_08330' => 'sgi', 'SEGI_10957' => 'sgi', 'SEGI_20515' => 'sgi', 'SEGI_23582' => 'sgi', 'SEGI_27309' => 'sgi', 'SGA_v2.0_scaffold219G42528' => 'sas', 'SGA_v2.0_scaffold225G43036' => 'sas', 'SGA_v2.0_scaffold240G44060' => 'sas', 'SGA_v2.0_scaffold245G44383' => 'sas', 'SGA_v2.0_scaffold32G12998' => 'sas', 'SGA_v2.0_scaffold373G50184' => 'sas', 'SGA_v2.0_scaffold374G50227' => 'sas', 'SGA_v2.0_scaffold423G51464' => 'sas', 'SGA_v2.0_scaffold66G22383' => 'sas', 'SGA_v2.0_scaffold85G26604' => 'sas', 'SGA_v2.0_scaffold9G04891' => 'sas', 'SHI05071' => 'shi', 'SMO119G0132' => 'smo', 'SMO340G0049' => 'smo', 'Solyc01g107130.4' => 'sly', 'Solyc02g081970.4' => 'sly', 'Solyc09g015670.3' => 'sly', 'Solyc10g074980.2' => 'sly', 'Sopen01g049390' => 'spe', 'Sopen02g026600' => 'spe', 'Sopen09g009870' => 'spe', 'Sopen10g027470' => 'spe', 'Sp1g26800' => 'spa', 'Sp3g27810' => 'spa', 'Sp3g27910' => 'spa', 'Sp4g17240' => 'spa', 'Sp4g20890' => 'spa', 'Sp5g09490' => 'spa', 'Sp6g41140' => 'spa', 'Sp7g18550' => 'spa', 'TAR623G1511' => 'tar', 'TAR625G1491' => 'tar', 'TAR626G0876' => 'tar', 'TAR628G1130' => 'tar', 'TAR629G1726' => 'tar', 'TAR633G1756' => 'tar', 'TAR636G1996' => 'tar', 'THA.LOC104800061' => 'tha', 'THA.LOC104806645' => 'tha', 'THA.LOC104811868' => 'tha', 'THA.LOC104816165' => 'tha', 'THA.LOC104819531' => 'tha', 'THA.LOC104819532' => 'tha', 'Thecc.02G002600' => 'tca', 'Thecc.02G116100' => 'tca', 'Thecc.04G151100' => 'tca', 'Thhalv10007059m.g' => 'esa', 'Thhalv10010181m.g' => 'esa', 'Thhalv10015537m.g' => 'esa', 'Thhalv10016381m.g' => 'esa', 'Thhalv10016384m.g' => 'esa', 'Thhalv10022594m.g' => 'esa', 'Thhalv10022598m.g' => 'esa', 'Thhalv10024676m.g' => 'esa', 'TPR.G14127' => 'tpr', 'TPR.G15116' => 'tpr', 'TPR.G27137' => 'tpr', 'TPR.G27431' => 'tpr', 'TPR.G28733' => 'tpr', 'TPR.G8319' => 'tpr', 'TWI14G0079' => 'twi', 'TWI23G1157' => 'twi', 'TWI38G1034' => 'twi', 'TWI53G0338' => 'twi', 'TWI77G0596' => 'twi', 'unitig_21.g20720' => 'ugi', 'unitig_22.g6611' => 'ugi', 'unitig_699.g19870' => 'ugi', 'unitig_747.g21230' => 'ugi', 'vmacro01966' => 'vma', 'vmacro08942' => 'vma', 'vmacro11014' => 'vma', 'vmacro11015' => 'vma', 'vmacro20372' => 'vma', 'VMungo0331G1139' => 'vmu', 'VMungo0720G0890' => 'vmu', 'VMungo1215G3415' => 'vmu', 'VMungo1309G0746' => 'vmu', 'VMungo1383G2313' => 'vmu', 'Zm00001eb016020' => 'zma', 'Zm00001eb093970' => 'zma', 'Zm00001eb195390' => 'zma', 'Zm00001eb224050' => 'zma', 'Zm00001eb330700' => 'zma', 'Zm00001eb389750' => 'zma', 'Zm00001eb395120' => 'zma' ) $gf_id = 'HOM05D000969' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000969' ) $data_identifier = 'HOM05D000969' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395120' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1